MATHEMATICAL BIOLOGY

PUBLICATIONS

• Jammula, V; Kramer, N; Manthei, S; DeArmond, M; Koshy-Chenthittayil, S (2024). The Effects of Cochlear Implants on Cognitive Function in Children and Adolescents with Hearing Loss: A Systematic Review Protocol. JBI Evidence Synthesis. https://journals.lww.com/jbisrir/abstract/9900/effect_of_cochlear_implants_on_cognitive_function.381.aspx

• Vaidyanuvatti, P.; Nelson, E.; Geiger, M.; Sadarangani, V.; DeArmond, M.; Koshy-Chenthittayil, S.; Hightower, C. E. (2024). Technology-assisted methods to assess the quality of the therapeutic alliance between health care providers and patients: a scoping review. Submitted to JBI Evidence Synthesis. 

• Stone, A.E.L; Koshy-Chenthittayil, S; DeArmond, M. From chaos to clarity: how COVID-19 exposed the urgent need for better evidence synthesis. Editorial, JBI Evidence Synthesis 22(10):p 1937-1938, October 2024. Link to Editorial. Link to YouTube video

• Hirabayashi, E; Mercado G; Hull, B, Soin, S; Koshy-Chenthittayil, S; Raman, S; Huang, T; Keerthisinghe, C; Feliciano, S; Dongo, A; Kal, J; Azizan, A; Duus, K; Else, T; DeArmond, M; Stone, A.E.L (2024). Comparison of diagnostic accuracy of rapid antigen tests for COVID19 compared to the viral genetic test in adults. JBI Evidence Synthesis. DOI: 10.11124/JBIES-23-00291 Link to Paper

• McAllister, B; Panteah, M; Nelson, E; Petersen, B; Hoskins, K; Koshy-Chenthittayil, S; Caromile, LA (2024). Scientific Evidence of Prostate Cancer Progression Outcomes in Transgender Females after Hormone Replacement Therapy-Scoping Review Protocol. Submitted to PLoS ONE. Pre-print available at https://www.medrxiv.org/content/10.1101/2024.02.08.24302459v1   

• Archambault, L.; Koshy-Chenthittayil, S.; Thompson, A.; Dongari-Bagtzoglou, A.; Laubenbacher, R.; & Mendes, P. (2021). Understanding Lactobacillus paracasei and Streptococcus oralis biofilm interactions through agent-based modeling. mSphere 6(6) https://doi.org/10.1128/mSphere.00875-21. Code available at https://github.com/skoshyc/StrepLactoBiofilmModeling   

• Koshy-Chenthittayil, S.; Mendes, P; Laubenbacher R.L. (2021). Optimization of agent-based models through dimension reduction: a case study in microbial ecology. Letters In Biomathematics, 8(1), 167-178
  https://lettersinbiomath.journals.publicknowledgeproject.org/index.php/lib/article/view/431.  Code available at https://github.com/skoshyc/optimization_Pareto 

• Koshy-Chenthittayil, S.; Archambault, L.; Senthilkumar, D.; Laubenbacher, R.; Mendes, P.; Dongari-Bagtzoglou, A. (2021) Agent Based Models of Polymicrobial Biofilms and the Microbiome—A Review. Microorganisms, 9, 417. https://doi.org/10.3390/microorganisms9020417

• Koshy-Chenthittayil, S.; Dimitrova, E.; Jenkins E.W.; Dean, B.C. (2021). A Computational Framework for Finding Parameter Sets Associated with Chaotic Dynamics In Silico Biology- vol. 14, no. 1-2, pp. 41-51, 2020 https://content.iospress.com/articles/in-silico-biology/isb200476. Code available at https://github.com/skoshyc/Computational-Framework-Chaotic-Dynamics 

• Sun, M.; Koshy-Chenthittayil, S.; & D’Souza, N. F. (2020). Quantitative Medicine and Reflection on Summer Research in Mathematical Biology. Harvard Educational Review, 90(2), 322-330.

• Koshy-Chenthittayil, S. & Dimitrova, E. (2020). From Chaos to Permanence Using Control Theory. Advances in Mathematical Sciences, 85-106.

• Dean, B.C.; Dimitrova, E.; Galande, A.; Jenkins, E.W.; Koshy, S. (2016). Determining Parameters Leading to Chaotic Dynamics in Systems https://arxiv.org/abs/1604.06951

PRESENTATIONS

• ‘Understanding chaos in cancer models using COPASI’ at 2024 American Mathematical Society Fall Central Sectional at the University of Texas, San Antonio. Sep 2024. Invited Talk. Co-authors M. Geiger, S. Zhang

• ‘Streptococcus oralis and Lactobacillus paracasei interactions through the lens of an agent-based model’ – Invited talk, 6th International Symposium on Systems Biology of Microbial Infections, Nov 2021,
  https://asb-conference.hki-jena.de/event/11/page/15-invited-speakers 

• 'Application of an agent-based model to biofilms' – Invited Talk, AWM Salon Series, Muhlenberg College, March 2021

• 'Using agent-based models to understand biofilm interactions' - Invited Talk, Mathematics Continued Conference, UConn, Oct 2020 (Virtual due to COVID-19)

• 'A mathematical modeling journey into biofilms'-Invited Talk, Adelphi AMS Seminar Series, Adelphi University, Oct 2020 (Virtual due to COVID-19)

• 'Optimization of agent-based models of mixed-species biofilms'- SIAM conference on the Life Sciences July 2020- Canceled due to COVID-19

• ‘Agent-based modeling of multi-species biofilm and its optimization’ presentation at Joint Mathematics Meeting (JMM) Jan 2020.

• ‘The dynamic nature of functional brain networks of emotional regulation’ presentation at Biology and Medicine in Mathematics (BAMM) May 2018

• ‘Permanence and Chaos in Dynamical Systems’ presentation at SIAM conference on the Life Sciences July 2016

• Poster presentation ‘Determination of Parameters for Chaos in Dynamical Systems’ at Séminaire de Mathématiques Supérieures: Dynamics of Biological Systems-Uty of Alberta June 2016; SIAM conference on the Life Sciences July 2016; Algebraic and Combinatorial Approaches in Systems Biology 2015 Conference in UCONN Health